PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G05430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 491aa    MW: 53515.1 Da    PI: 9.9594
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G05430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-111281883498
                      SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + +++ ++ g++W++k+  r ++gr +l++GW +F+ a+gL +g fvv+++    ++ l v +f+
  LPERR04G05430.1 128 RVVMVGSPVGKVWDIKV-GRDGDGRAFLGRGWPDFAAAHGLGVGWFVVLRHR---GGVLAVEAFD 188
                      46788889*********.567777799***********************54...4556777776 PP

2B3391.4e-122273031594
                      -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       +++p kf++++  +++ +s t  + ++ g+s  ++l  ++ +++++l++GW++F   +g+  gD+++F++ g+  f  ++
  LPERR04G05430.1 227 KMRIPDKFVQHYlTEENLNSNTANILSSLGKSCHIEL--ENDRSGVFLKGGWSQFLLFHGISRGDVILFRYGGNLVF--KI 303
                      489******888944456788****************..*******************************9886665..33 PP

3B370.71.9e-22392483192
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                      ++k++++++ lk+++++l ++f+e++g ++e+  t+tl   +g      rsWev    r+ +++ y+l++GWk+F+++n Lk+gD+++F ++++
  LPERR04G05430.1 392 WIKKEINEYILKRCLVSLARTFCESIGFSEES--TITLIEAEGenscgsRSWEVAG--RRDKEAcYLLGAGWKRFCEDNSLKVGDVCTFNVVDN 481
                      789***********************988655..89999999999***********..9999889*************************7653 PP

                      SEE.. CS
               B3  88 sefel 92 
                         ++
  LPERR04G05430.1 482 ---TM 483
                      ...33 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.003582190IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-1184192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1085192IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-9126188IPR003340B3 DNA binding domain
PROSITE profilePS508639.573129190IPR003340B3 DNA binding domain
CDDcd100171.32E-9137188No hitNo description
Gene3DG3DSA:2.40.330.103.9E-16212309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-16213315IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.038213309IPR003340B3 DNA binding domain
CDDcd100171.31E-11214306No hitNo description
SMARTSM010190.0021216309IPR003340B3 DNA binding domain
PfamPF023628.7E-11227301IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957392491IPR003340B3 DNA binding domain
PfamPF023621.2E-15392489IPR003340B3 DNA binding domain
SMARTSM010199.0E-9393491IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-17394489IPR015300DNA-binding pseudobarrel domain
CDDcd100178.78E-9397476No hitNo description
SuperFamilySSF1019362.35E-15398490IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MACGQGSPAR MLSDVGMLGQ PLLGSSRQTE DAYGFVKMRA QKGLPAFRSV SIGGCNDSIS  60
RPAMGSRGGD RRETGGGGAA VQLKVLVPSS FRRMRICDEL AARLGLGAVG GGRGQGDATR  120
AAAVATARVV MVGSPVGKVW DIKVGRDGDG RAFLGRGWPD FAAAHGLGVG WFVVLRHRGG  180
VLAVEAFDTT CCLKEFGADS SAFMTSGSGI ARKPQFLGVL LPDFMEKMRI PDKFVQHYLT  240
EENLNSNTAN ILSSLGKSCH IELENDRSGV FLKGGWSQFL LFHGISRGDV ILFRYGGNLV  300
FKINVFGLNG RQKDFRAKSI NIHQSTGKQQ EAPAFPRRKC KEKNKKFGKG NENQQESPCS  360
WGVSCKKGRK SDRDRNSAKR SRSTYEIGSS AWIKKEINEY ILKRCLVSLA RTFCESIGFS  420
EESTITLIEA EGENSCGSRS WEVAGRRDKE ACYLLGAGWK RFCEDNSLKV GDVCTFNVVD  480
NTMWHVVIER S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634795.11e-153PREDICTED: putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS750.0Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A0D9W3K60.0A0A0D9W3K6_9ORYZ; Uncharacterized protein
STRINGBGIOSGA015307-PA1e-180(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-12B3 family protein